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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs6088813 1 rs6142358 chr20:33960308 UQCC chr20:33890383-33999833:- -0.32 -10.28 1.56E-22 Height
THCA cis rs6088813 1 rs6142359 chr20:33960450 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6142359 chr20:33960450 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs6142359 chr20:33960450 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs6142359 chr20:33960450 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height
THCA cis rs6088813 1 rs6142360 chr20:33960486 CPNE1 chr20:34213968-34262539:- 0.3 5.78 1.31E-8 Height
THCA cis rs6088813 1 rs6142360 chr20:33960486 GDF5 chr20:33897002-34042568:- -0.18 -3.77 0.000187 Height
THCA cis rs6088813 1 rs6142360 chr20:33960486 UQCC chr20:33890383-33999833:- 0.32 10.17 4.02E-22 Height
THCA cis rs6088813 1 rs6142369 chr20:33973315 CPNE1 chr20:34213968-34262539:- 0.3 5.88 7.84E-9 Height
THCA cis rs6088813 1 rs6142369 chr20:33973315 GDF5 chr20:33897002-34042568:- -0.17 -3.74 0.000207 Height
THCA cis rs6088813 1 rs6142369 chr20:33973315 UQCC chr20:33890383-33999833:- 0.32 10.18 3.81E-22 Height
THCA cis rs6088813 1 rs6142370 chr20:33973378 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6142370 chr20:33973378 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs6142370 chr20:33973378 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs6142370 chr20:33973378 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height